Basic Information
Locus ID:
Thhalv10022627m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Proteinaceous RNase P
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_11 | 3028186 | 3031241 | + | Thhalv10022627m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 61,764.98 Da | 42.49 | 79.62 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18671 | PIN_PRORP-Zc3h12a-like | 340 | 466 | 1.17407E-68 | - |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 21 | 232 | 5.3E-83 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 275 | 511 | 1.1E-61 | IPR031595 |
| Gene3D | G3DSA:3.40.50.11980 | - | 293 | 477 | 9.1E-223 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 29 | 512 | 9.1E-223 | IPR011990 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16650.1 | proteinaceous RNase P 2. | 0 |
| RefSeq | XP_006409414.1 | proteinaceous RNase P 2 [Eutrema salsugineum] | 0 |
| Q680B9 | Proteinaceous RNase P 2 OS=Arabidopsis thaliana OX=3702 GN=PRORP2 PE=1 SV=1 | 0 | |
| TrEMBL | V4M761 | ribonuclease P OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022627mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology