Basic Information
Locus ID:
Thhalv10022573m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_11 | 2128511 | 2130947 | - | Thhalv10022573m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 86,223.77 Da | 44.53 | 71.24 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 140 | 194 | 1.9E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 372 | 423 | 7.5E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 624 | 671 | 8.1E-9 | IPR004146 |
| Pfam | PF03107 | C1 domain | 205 | 251 | 2.3E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 320 | 362 | 8.8E-11 | IPR004146 |
| Pfam | PF03107 | C1 domain | 460 | 508 | 5.1E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 81 | 126 | 3.2E-9 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 598 | 682 | 2.09E-18 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 49 | 136 | 1.37E-16 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 399 | 520 | 2.54E-13 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 291 | 375 | 5.75E-18 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 205 | 253 | 1.79E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 329 | 400 | 3.7E-5 | IPR013083 |
| SMART | SM00249 | PHD_3 | 479 | 540 | 16.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 164 | 228 | 16.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 587 | 648 | 8.9 | IPR001965 |
| SMART | SM00249 | PHD_3 | 335 | 396 | 2.0 | IPR001965 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 273 | 344 | 8.685346 | IPR017455 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19650.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_006409327.1 | uncharacterized protein LOC18026334 [Eutrema salsugineum] | 0 |
| TrEMBL | V4LJQ2 | FYVE-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022573mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |