Basic Information
Locus ID:
Thhalv10022489m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
protein modification by small protein conjugation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_25 | 522291 | 522823 | + | Thhalv10022489m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 11,780.55 Da | 36.02 | 70.87 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 4 | 101 | 1.53445E-33 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 102 | 3.8E-28 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 101 | 1.48E-29 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 2 | 103 | 3.4E-30 | IPR016135 |
| SMART | SM00212 | ubc_7 | 5 | 101 | 1.3E-5 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 2 | 103 | 26.897217 | IPR000608 |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53300.3 | ubiquitin-conjugating enzyme 10. Encodes a ubiquitin conjugating enzyme. | 0 |
| RefSeq | XP_006397388.2 | ubiquitin-conjugating enzyme E2 28 [Eutrema salsugineum] | 0 |
| Q8S920 | Ubiquitin-conjugating enzyme E2 5A OS=Oryza sativa subsp. japonica OX=39947 GN=UBC5A PE=2 SV=1 | 0 | |
| TrEMBL | V4N1A0 | UBC core domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022489mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 7 | Thhalv10002313m.g.v1.0, Thhalv10003318m.g.v1.0 ... |