halophFGD

Basic Information

Locus ID: Thhalv10022427m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: mitochondrial transcription termination factor family protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_13	7777027	7778391	-	Thhalv10022427m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.23	50,673.45 Da	41.79	90.09	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02536	mTERF	60	416	7.0E-117	IPR003690
Gene3D	G3DSA:1.25.70.10	Transcription termination factor 3, mitochondrial	202	426	3.5E-48	IPR038538
SMART	SM00733	mt_12	74	105	3.3E-4	IPR003690
SMART	SM00733	mt_12	110	142	1100.0	IPR003690
SMART	SM00733	mt_12	295	325	0.0021	IPR003690
SMART	SM00733	mt_12	330	361	3.6E-4	IPR003690
SMART	SM00733	mt_12	362	396	0.8	IPR003690
SMART	SM00733	mt_12	225	255	1.7	IPR003690
SMART	SM00733	mt_12	260	290	0.019	IPR003690

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0003690 (double-stranded DNA binding)

KEGG Pathway

KO Term:

K15032 (NOT_FOUND)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G61960.1	Mitochondrial transcription termination factor family protein.
RefSeq	XP_006408055.1	uncharacterized protein LOC18024021 [Eutrema salsugineum]
TrEMBL	V4MAS1	Mitochondrial transcription termination factor family protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022427mg PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	13	AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... AT1G61990.1, AT1G62010.1, AT1G62085.1, AT1G62110.1, AT1G62120.1, AT1G62150.1, AT1G62490.1, AT3G46950.1, AT5G23930.1
Brassicaceae	Eutrema salsugineum	24	Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... Thhalv10022427m.g.v1.0, Thhalv10023445m.g.v1.0, Thhalv10023447m.g.v1.0, Thhalv10023457m.g.v1.0, Thhalv10023461m.g.v1.0, Thhalv10023467m.g.v1.0, Thhalv10023470m.g.v1.0, Thhalv10023472m.g.v1.0, Thhalv10023505m.g.v1.0, Thhalv10023801m.g.v1.0, Thhalv10023838m.g.v1.0, Thhalv10023868m.g.v1.0, Thhalv10023911m.g.v1.0, Thhalv10023915m.g.v1.0, Thhalv10024025m.g.v1.0, Thhalv10024039m.g.v1.0, Thhalv10024041m.g.v1.0, Thhalv10024076m.g.v1.0, Thhalv10024090m.g.v1.0, Thhalv10024124m.g.v1.0, Thhalv10024133m.g.v1.0, Thhalv10024167m.g.v1.0
Brassicaceae	Schrenkiella parvula	14	Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... Sp2g02560.v2.2, Sp2g02570.v2.2, Sp2g02580.v2.2, Sp2g02590.v2.2, Sp2g02600.v2.2, Sp2g02610.v2.2, Sp2g23340.v2.2, Sp3g04430.v2.2, Sp3g28660.v2.2, Sp5g14790.v2.2, Sp7g03520.v2.2
Brassicaceae	Brassica nigra	12	BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... BniB02g058870.2N, BniB02g059080.2N, BniB02g059110.2N, BniB04g019510.2N, BniB04g021090.2N, BniB04g021110.2N, BniB04g021360.2N, BniB07g047770.2N, BniB08g059690.2N