Basic Information
Locus ID:
Thhalv10022423m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 689823 | 692259 | - | Thhalv10022423m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.86 | 54,481.78 Da | 51.82 | 73.15 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 20 | 60 | 1.6E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 12 | 69 | 5.96E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 113 | 3.5E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 20 | 60 | 4.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 20 | 61 | 11.486073 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 36 | 45 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 365 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23060.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018491198.1 | PREDICTED: probable E3 ubiquitin protein ligase DRIPH [Raphanus sativus] | 0 |
| Q9LS86 | Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis thaliana OX=3702 GN=At3g23060 PE=1 SV=1 | 0 | |
| TrEMBL | V4LYG3 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022423mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G23060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022423m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g20730.v2.2, Sp3g20740.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g025000.2N, BniB03g025060.2N, BniB03g025070.2N ... |