Basic Information
Locus ID:
Thhalv10022377m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
3-phosphoinositide-dependent protein kinase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 3345595 | 3346752 | - | Thhalv10022377m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 34,996.70 Da | 50.95 | 85.17 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 148 | 227 | 1.5E-23 | IPR006527 |
| Pfam | PF00646 | F-box domain | 4 | 44 | 9.3E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 60 | 2.35E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 46 | 9.0E-8 | - |
| SMART | SM00256 | fbox_2 | 7 | 47 | 1.2E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 95 | 228 | 1.7E-23 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 47 | 11.140122 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17540.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_020889163.1 | LOW QUALITY PROTEIN: putative F-box/kelch-repeat protein At3g17540 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9LUP4 | Putative F-box/kelch-repeat protein At3g17540 OS=Arabidopsis thaliana OX=3702 GN=At3g17540 PE=4 SV=1 | 0 | |
| TrEMBL | V4NNU6 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022377mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005860 |
| Brassicaceae | Arabidopsis thaliana | 81 | AT1G11620.1, AT1G25141.1, AT1G50470.1, AT1G62270.1 ... |
| Brassicaceae | Eutrema salsugineum | 96 | Thhalv10000454m.g.v1.0, Thhalv10000467m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 15 | Sp1g20770.v2.2, Sp3g14050.v2.2, Sp3g15200.v2.2 ... |
| Brassicaceae | Brassica nigra | 83 | BniB01g038780.2N, BniB01g039020.2N, BniB01g039120.2N ... |