Basic Information
Locus ID:
Thhalv10022279m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 8622149 | 8623294 | + | Thhalv10022279m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 40,963.76 Da | 44.86 | 76.25 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 149 | 192 | 3.14084E-19 | - |
| Pfam | PF13639 | Ring finger domain | 149 | 192 | 9.8E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 196 | 1.77E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 198 | 7.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 150 | 191 | 1.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 150 | 192 | 12.887609 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 345 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03550.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006408292.1 | RING-H2 finger protein ATL51 [Eutrema salsugineum] | 0 |
| Q9SRQ8 | RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2 | 0 | |
| TrEMBL | V4LGU6 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022279mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology