Basic Information
Locus ID:
Thhalv10022253m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 6611097 | 6616545 | + | Thhalv10022253m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 109,779.43 Da | 48.74 | 78.65 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 276 | 323 | 0.035 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 591 | 622 | 0.022 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 48 | 418 | 5.04E-21 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 312 | 622 | 3.48E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 156 | 352 | 4.3E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 27 | 149 | 9.9E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 357 | 488 | 3.0E-15 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 489 | 641 | 1.6E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 354 | 392 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 488 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 268 | 323 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 580 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 447 | 0.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 56 | 97 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 226 | 261 | 63.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 583 | 622 | 5.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 499 | 536 | 1.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 324 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 590 | 623 | 10.909469 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 590 | 623 | 9.151057 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 893 | 914 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 777 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09080.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_024015552.1 | mitogen-activated protein kinase-binding protein 1 [Eutrema salsugineum] | 0 |
| Q6DFF9 | Mitogen-activated protein kinase-binding protein 1 OS=Xenopus laevis OX=8355 GN=mapkbp1 PE=2 SV=1 | 0 | |
| TrEMBL | V4LFB4 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022253mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14799 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285450 |
| Apiaceae | Apium graveolens | 1 | Ag5G02363 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G25194 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G09080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022253m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07530.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g058390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1051 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1076, Cgl08G1077 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1010s00004.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1069 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006461 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09988 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1767 |
| Salicaceae | Populus euphratica | 1 | populus_peu11401 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630690 |
| Solanaceae | Solanum chilense | 1 | SOLCI000172200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029641 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4371 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1795 |