Basic Information
Locus ID:
Thhalv10022171m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 4591303 | 4591893 | + | Thhalv10022171m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 22,252.84 Da | 45.15 | 79.44 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 88 | 131 | 4.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 69 | 137 | 7.57E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 141 | 3.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 89 | 130 | 4.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 89 | 131 | 12.267982 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 162 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14320.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_006407093.2 | LOW QUALITY PROTEIN: putative RING-H2 finger protein ATL61 [Eutrema salsugineum] | 0 |
| Q9LUL6 | Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 PE=3 SV=1 | 0 | |
| TrEMBL | V4NPT8 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022171mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology