Basic Information
Locus ID:
Thhalv10022092m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 3303998 | 3305185 | - | Thhalv10022092m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 43,017.68 Da | 37.59 | 97.75 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 115 | 174 | 1.7E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 22 | 64 | 6.9E-5 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 47 | 374 | 1.59E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 21 | 183 | 7.5E-36 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 184 | 365 | 3.7E-29 | IPR032675 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 139 | 162 | 7.457832 | IPR001611 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17640.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_006406709.1 | LRR receptor-like serine/threonine-protein kinase ERECTA [Eutrema salsugineum] | 0 |
| TrEMBL | V4M046 | LRRNT_2 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022092mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology