HalophFGD

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Basic Information
Locus ID: Thhalv10022091m.g.v1.0
Species & Taxonomic ID: Eutrema salsugineum & 72664
Genome Assembly: GCF_000478725.1
Description: F-box LRR-repeat kelch-repeat protein At1g11620
Maps and Mapping Data
Chromosome Start End Strand ID
scaffold_13 1932198 1933815 + Thhalv10022091m.g.v1.0
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.95 38,566.99 Da 37.04 81.98 -0.31
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF07734 F-box associated 174 327 1.6E-50 IPR006527
Pfam PF00646 F-box domain 5 47 4.5E-11 IPR001810
SUPERFAMILY SSF81383 F-box domain 3 144 6.54E-18 IPR036047
Gene3D G3DSA:1.20.1280.50 - 1 82 1.3E-8 -
SMART SM00256 fbox_2 8 48 3.2E-8 IPR001810
TIGRFAM TIGR01640 F_box_assoc_1: F-box protein interaction domain 170 297 9.3E-23 IPR017451
ProSiteProfiles PS50181 F-box domain profile. 2 48 10.504256 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G20710.1 F-box family protein. 0
RefSeq XP_024015001.1 putative F-box protein At5g36200 [Eutrema salsugineum] 0
Swiss-Prot Q9LHQ0 Putative F-box/kelch-repeat protein At3g20710 OS=Arabidopsis thaliana OX=3702 GN=At3g20710 PE=4 SV=1 0
TrEMBL V4LBI6 F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022091mg PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Arecaceae Cocos nucifera 1 COCNU_01G005860
Brassicaceae Arabidopsis thaliana 81 AT1G11620.1, AT1G25141.1, AT1G50470.1, AT1G62270.1 ...
AT1G65990.1, AT2G04920.1, AT2G07140.1, AT2G11200.1, AT2G17830.1, AT2G18780.1, AT2G24510.1, AT2G27520.1, AT2G38590.1, AT3G03405.1, AT3G04250.1, AT3G16020.1, AT3G16740.1, AT3G16820.1, AT3G16880.1, AT3G17265.1, AT3G17270.1, AT3G17280.1, AT3G17320.1, AT3G17400.1, AT3G17480.1, AT3G17490.1, AT3G17500.1, AT3G17530.1, AT3G17540.1, AT3G17560.1, AT3G17570.1, AT3G17620.1, AT3G18120.1, AT3G18320.1, AT3G18330.1, AT3G18910.1, AT3G18980.1, AT3G19410.1, AT3G19470.1, AT3G19560.1, AT3G20690.1, AT3G20700.1, AT3G20710.1, AT3G21120.1, AT3G21130.1, AT3G21170.1, AT3G22350.1, AT3G22421.1, AT3G22700.1, AT3G22710.1, AT3G22720.1, AT3G22730.1, AT3G22770.1, AT3G22870.1, AT3G22940.1, AT3G23260.1, AT3G23420.1, AT3G23633.1, AT3G23680.1, AT3G23685.1, AT3G24580.1, AT3G24700.1, AT3G25090.1, AT3G25460.1, AT3G44120.1, AT3G49980.1, AT4G09870.1, AT4G10190.1, AT4G10740.1, AT4G33290.1, AT5G36190.1, AT5G36200.1, AT5G36730.1, AT5G36820.1, AT5G41490.1, AT5G41500.1, AT5G41510.1, AT5G42460.1, AT5G47300.1, AT5G51000.1, AT5G62830.1
Brassicaceae Eutrema salsugineum 96 Thhalv10000454m.g.v1.0, Thhalv10000467m.g.v1.0 ...
Thhalv10000599m.g.v1.0, Thhalv10000604m.g.v1.0, Thhalv10001129m.g.v1.0, Thhalv10001171m.g.v1.0, Thhalv10001844m.g.v1.0, Thhalv10002009m.g.v1.0, Thhalv10002791m.g.v1.0, Thhalv10002795m.g.v1.0, Thhalv10002817m.g.v1.0, Thhalv10002867m.g.v1.0, Thhalv10002868m.g.v1.0, Thhalv10002911m.g.v1.0, Thhalv10002915m.g.v1.0, Thhalv10002939m.g.v1.0, Thhalv10002957m.g.v1.0, Thhalv10002977m.g.v1.0, Thhalv10002981m.g.v1.0, Thhalv10002985m.g.v1.0, Thhalv10002999m.g.v1.0, Thhalv10003000m.g.v1.0, Thhalv10003040m.g.v1.0, Thhalv10003050m.g.v1.0, Thhalv10003090m.g.v1.0, Thhalv10003102m.g.v1.0, Thhalv10003403m.g.v1.0, Thhalv10005679m.g.v1.0, Thhalv10006371m.g.v1.0, Thhalv10007777m.g.v1.0, Thhalv10009814m.g.v1.0, Thhalv10012007m.g.v1.0, Thhalv10012157m.g.v1.0, Thhalv10015377m.g.v1.0, Thhalv10015387m.g.v1.0, Thhalv10015418m.g.v1.0, Thhalv10015430m.g.v1.0, Thhalv10015464m.g.v1.0, Thhalv10015770m.g.v1.0, Thhalv10015830m.g.v1.0, Thhalv10015889m.g.v1.0, Thhalv10017529m.g.v1.0, Thhalv10017637m.g.v1.0, Thhalv10020932m.g.v1.0, Thhalv10020934m.g.v1.0, Thhalv10020988m.g.v1.0, Thhalv10021906m.g.v1.0, Thhalv10021918m.g.v1.0, Thhalv10021925m.g.v1.0, Thhalv10021928m.g.v1.0, Thhalv10021950m.g.v1.0, Thhalv10021953m.g.v1.0, Thhalv10021978m.g.v1.0, Thhalv10021981m.g.v1.0, Thhalv10022006m.g.v1.0, Thhalv10022064m.g.v1.0, Thhalv10022067m.g.v1.0, Thhalv10022074m.g.v1.0, Thhalv10022075m.g.v1.0, Thhalv10022089m.g.v1.0, Thhalv10022091m.g.v1.0, Thhalv10022121m.g.v1.0, Thhalv10022140m.g.v1.0, Thhalv10022141m.g.v1.0, Thhalv10022145m.g.v1.0, Thhalv10022148m.g.v1.0, Thhalv10022163m.g.v1.0, Thhalv10022189m.g.v1.0, Thhalv10022250m.g.v1.0, Thhalv10022266m.g.v1.0, Thhalv10022270m.g.v1.0, Thhalv10022281m.g.v1.0, Thhalv10022288m.g.v1.0, Thhalv10022315m.g.v1.0, Thhalv10022361m.g.v1.0, Thhalv10022364m.g.v1.0, Thhalv10022368m.g.v1.0, Thhalv10022377m.g.v1.0, Thhalv10022393m.g.v1.0, Thhalv10022401m.g.v1.0, Thhalv10022418m.g.v1.0, Thhalv10022425m.g.v1.0, Thhalv10022798m.g.v1.0, Thhalv10023157m.g.v1.0, Thhalv10026768m.g.v1.0, Thhalv10026986m.g.v1.0, Thhalv10027003m.g.v1.0, Thhalv10027013m.g.v1.0, Thhalv10027248m.g.v1.0, Thhalv10027355m.g.v1.0, Thhalv10027376m.g.v1.0, Thhalv10027471m.g.v1.0, Thhalv10027516m.g.v1.0, Thhalv10027561m.g.v1.0, Thhalv10028127m.g.v1.0, Thhalv10029509m.g.v1.0
Brassicaceae Schrenkiella parvula 15 Sp1g20770.v2.2, Sp3g14050.v2.2, Sp3g15200.v2.2 ...
Sp3g15660.v2.2, Sp3g15690.v2.2, Sp3g17310.v2.2, Sp3g18730.v2.2, Sp3g19130.v2.2, Sp3g21250.v2.2, Sp3g22340.v2.2, Sp4g04370.v2.2, Sp4g16570.v2.2, Sp4g17180.v2.2, Sp7g11920.v2.2, Sp7g29450.v2.2
Brassicaceae Brassica nigra 83 BniB01g038780.2N, BniB01g039020.2N, BniB01g039120.2N ...
BniB01g042490.2N, BniB01g042510.2N, BniB01g042540.2N, BniB01g042580.2N, BniB01g042590.2N, BniB01g042610.2N, BniB01g043040.2N, BniB01g043050.2N, BniB01g043060.2N, BniB01g043110.2N, BniB01g044140.2N, BniB01g044150.2N, BniB01g045040.2N, BniB01g047300.2N, BniB01g047310.2N, BniB01g047900.2N, BniB01g049140.2N, BniB01g049150.2N, BniB02g010180.2N, BniB02g010740.2N, BniB02g047620.2N, BniB02g064000.2N, BniB03g024790.2N, BniB03g025020.2N, BniB03g039860.2N, BniB03g049230.2N, BniB03g049760.2N, BniB03g068000.2N, BniB04g038530.2N, BniB04g038580.2N, BniB04g038590.2N, BniB04g038600.2N, BniB04g038610.2N, BniB04g038620.2N, BniB04g043970.2N, BniB04g056000.2N, BniB04g056010.2N, BniB05g004620.2N, BniB05g007210.2N, BniB05g007230.2N, BniB05g017560.2N, BniB05g019400.2N, BniB05g019430.2N, BniB05g025140.2N, BniB05g038570.2N, BniB06g008450.2N, BniB06g026860.2N, BniB06g027320.2N, BniB06g027400.2N, BniB06g027440.2N, BniB06g028000.2N, BniB06g048280.2N, BniB07g002470.2N, BniB07g002490.2N, BniB07g002510.2N, BniB07g023750.2N, BniB07g024380.2N, BniB07g024430.2N, BniB07g029280.2N, BniB07g029470.2N, BniB07g029780.2N, BniB07g030600.2N, BniB07g031750.2N, BniB07g048390.2N, BniB07g048640.2N, BniB07g048810.2N, BniB07g050430.2N, BniB07g051260.2N, BniB07g052390.2N, BniB07g052550.2N, BniB07g052760.2N, BniB07g052960.2N, BniB07g053790.2N, BniB07g057530.2N, BniB07g057550.2N, BniB08g006680.2N, BniB08g006690.2N, BniB08g019980.2N, BniB08g038820.2N, BniS06172g150.2N
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.