Basic Information
Locus ID:
Thhalv10022054m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 2373565 | 2376734 | - | Thhalv10022054m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 110,687.47 Da | 33.13 | 98.73 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 678 | 967 | 1.15242E-88 | - |
| Pfam | PF00069 | Protein kinase domain | 674 | 956 | 1.2E-38 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 65 | 1.8E-4 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 509 | 567 | 5.3E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 165 | 424 | 1.53E-51 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 654 | 967 | 2.29E-69 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 34 | 185 | 1.5E-16 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 364 | 574 | 1.25E-44 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 145 | 363 | 2.5E-53 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 654 | 766 | 3.2E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 364 | 601 | 5.5E-61 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 144 | 6.9E-20 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 767 | 990 | 6.1E-58 | - |
| SMART | SM00220 | serkin_6 | 672 | 946 | 5.3E-29 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 672 | 972 | 35.594372 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 812 | 824 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19700.1 | Leucine-rich repeat protein kinase family protein. Encodes leucine rich repeat (LRR) kinase. Iku2-3 identified in a screen for mutants with abnormal endosperm. Sporophytic recessive mutants have reduced embryo and endosperm size. Seed size is also reduced and the shape is abnormal suggesting an interaction between the endosperm and cell elongation in the integuments. | 0 |
| RefSeq | XP_006406469.1 | receptor-like protein kinase HAIKU2 [Eutrema salsugineum] | 0 |
| Q9LJM4 | Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana OX=3702 GN=IKU2 PE=1 SV=1 | 0 | |
| TrEMBL | V4LZG6 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022054mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10766, jg19348, jg6162 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8825 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036492 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39544, Sbi_jg54770 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14789 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00028522 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12682, Sgl17922 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018473, gene:ENSEOMG00000036411 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0020330, CQ.Regalona.r1.1BG0004780 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30042510, pistato.v30099080, pistato.v30103470 |
| Apiaceae | Apium graveolens | 4 | Ag1G00661, Ag2G00472, Ag4G01884, Ag9G00250 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G019300 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705762, gene-LOC120104079 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.721.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G21189, Ftri16G32708, Ftri4G21841 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G09970.2, AT3G19700.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006696m.g.v1.0, Thhalv10022054m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g08630.v2.2, Sp3g17740.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g005110.2N, BniB03g003650.2N, BniB07g051070.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq03G2730, Ceq03G2731, Ceq09G0507 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G2871, Cgl03G2872, Cgl09G0547 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14310 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g31570, gene.Thate06g14080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1179, nbisL1-mrna-12394 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.275, evm.TU.LG08.683 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037137 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23386, Lb7G32874 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.4194, BH05.4275, CH05.4504 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0399330, gene-QOZ80_5AG0399340 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0088480.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000162, gene-QYE76_000163 |
| Poaceae | Oryza coarctata | 2 | Oco23G011120, Oco24G010930 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g33380.1, LOC_Os12g43640.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G166000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0704392, Pt_Chr0704400 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G019800, Chr06G020720, Chr19G007130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G031200 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG002040 |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G103900.1.cds1, TraesCS1B02G381300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb134290_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25399, Zma_g26192 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG12.1733, evm.TU.LG12.1734 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g26960 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_2_RagTag.448, evm.TU.Scaffold_7_RagTag.878 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-19335, nbisL1-mrna-4750, nbisL1-mrna-9380 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10356, nbisL1-mrna-1060, nbisL1-mrna-2021 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-20586, nbisL1-mrna-6707, nbisL1-mrna-9718 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000002l.264, add.evm.TU.utg000018l.92 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00003231, Maker00004916, Maker00010864 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11476, nbisL1-mrna-17745, nbisL1-mrna-22020 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10125, nbisL1-mrna-16530, nbisL1-mrna-17078 |
| Salicaceae | Populus euphratica | 2 | populus_peu32166, populus_peu36155 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598892, gene-LOC132627686 |
| Solanaceae | Solanum chilense | 2 | SOLCI001114500, SOLCI005026100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107001432, gene-LOC107004758 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.28054_chr04_+, gene_1807, gene_4747 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2766, TC10G2332 |
| Zosteraceae | Zostera marina | 1 | Zosma05g29130.v3.1 |