Basic Information
Locus ID:
Thhalv10022033m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box protein At3g16210
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 3854879 | 3855590 | + | Thhalv10022033m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 26,141.94 Da | 37.72 | 80.09 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 4 | 39 | 8.8E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 58 | 8.76E-14 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 91 | 198 | 4.71E-5 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 40 | 5.1E-10 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 5.4E-10 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 48 | 11.775988 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16210.1 | F-box family protein. | 0 |
| RefSeq | XP_006406863.1 | putative F-box protein At3g16210 [Eutrema salsugineum] | 0 |
| Q9LU24 | Putative F-box protein At3g16210 OS=Arabidopsis thaliana OX=3702 GN=At3g16210 PE=4 SV=1 | 0 | |
| TrEMBL | V4LWU3 | F-box domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022033mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022033m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB07g028790.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007105 |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_037912, gene-QYE76_038073, gene-QYE76_038076 ... |