Basic Information
Locus ID:
Thhalv10022020m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box FBD LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 4447166 | 4448679 | - | Thhalv10022020m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 50,541.14 Da | 44.95 | 97.43 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 369 | 411 | 6.2E-5 | IPR006566 |
| Pfam | PF00646 | F-box domain | 19 | 56 | 6.1E-8 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 104 | 352 | 2.67E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 67 | 6.15E-12 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 57 | 432 | 1.5E-11 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 56 | 1.1E-6 | - |
| SMART | SM00579 | 9598neu4hmm | 372 | 440 | 7.9E-4 | IPR006566 |
| SMART | SM00256 | fbox_2 | 23 | 64 | 2.4E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 17 | 65 | 10.451268 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14710.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_006407053.2 | LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At3g14710 [Eutrema salsugineum] | 0 |
| Q9LUC4 | F-box/FBD/LRR-repeat protein At3g14710 OS=Arabidopsis thaliana OX=3702 GN=At3g14710 PE=2 SV=1 | 0 | |
| TrEMBL | V4NPR0 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022020mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G14710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022020m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g12940.v2.2 |
| Plantaginaceae | Plantago ovata | 85 | Pov_00000641, Pov_00001267, Pov_00001269, Pov_00001271 ... |