Basic Information
Locus ID:
Thhalv10021937m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 3702528 | 3705378 | + | Thhalv10021937m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 62,438.42 Da | 48.16 | 87.36 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 55 | 306 | 5.76924E-101 | - |
| CDD | cd18793 | SF2_C_SNF | 464 | 519 | 1.01722E-29 | - |
| CDD | cd16449 | RING-HC | 398 | 429 | 4.42162E-6 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 466 | 510 | 4.7E-6 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 71 | 309 | 8.6E-61 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 211 | 547 | 2.44E-33 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 387 | 438 | 4.52E-7 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 21 | 306 | 1.19E-49 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 403 | 444 | 9.9E-6 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 445 | 549 | 1.0E-33 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 22 | 327 | 1.9E-61 | IPR038718 |
| SMART | SM00490 | helicmild6 | 384 | 510 | 5.4E-4 | IPR001650 |
| SMART | SM00487 | ultradead3 | 51 | 281 | 5.1E-32 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 70 | 268 | 17.488096 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 407 | 416 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16600.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_024015524.1 | helicase-like transcription factor CHR27 [Eutrema salsugineum] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | V4LCU9 | Helicase ATP-binding domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10021937mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology