Basic Information
Locus ID:
Thhalv10021925m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
TPx1
Description:
peroxiredoxin activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 8300976 | 8302232 | - | Thhalv10021925m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 49,506.48 Da | 53.52 | 79.98 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 2 | 41 | 5.6E-6 | IPR001810 |
| Pfam | PF07734 | F-box associated | 214 | 372 | 4.5E-52 | IPR006527 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 101 | 340 | 5.62E-6 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 135 | 2.62E-17 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 59 | 2.5E-6 | - |
| SMART | SM00256 | fbox_2 | 5 | 44 | 9.5E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 102 | 337 | 3.4E-43 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 44 | 11.219605 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33290.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006408206.1 | F-box/kelch-repeat protein At4g33290 [Eutrema salsugineum] | 0 |
| Q9SZA6 | F-box/kelch-repeat protein At4g33290 OS=Arabidopsis thaliana OX=3702 GN=At4g33290 PE=4 SV=3 | 0 | |
| TrEMBL | V4M0N8 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10021925mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005860 |
| Brassicaceae | Arabidopsis thaliana | 81 | AT1G11620.1, AT1G25141.1, AT1G50470.1, AT1G62270.1 ... |
| Brassicaceae | Eutrema salsugineum | 96 | Thhalv10000454m.g.v1.0, Thhalv10000467m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 15 | Sp1g20770.v2.2, Sp3g14050.v2.2, Sp3g15200.v2.2 ... |
| Brassicaceae | Brassica nigra | 83 | BniB01g038780.2N, BniB01g039020.2N, BniB01g039120.2N ... |