Basic Information
Locus ID:
Thhalv10021923m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Weak chloroplast movement under blue light
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 3709918 | 3711087 | + | Thhalv10021923m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 44,597.51 Da | 42.59 | 85.81 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 206 | 372 | 4.9E-39 | IPR006527 |
| Pfam | PF00646 | F-box domain | 20 | 55 | 6.4E-11 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 131 | 4.71E-16 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 57 | 6.6E-10 | - |
| SMART | SM00256 | fbox_2 | 21 | 61 | 6.9E-13 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 105 | 348 | 5.6E-45 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 15 | 68 | 12.199898 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16580.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006406824.1 | F-box protein At2g14710 [Eutrema salsugineum] | 0 |
| Q9LUS6 | F-box/kelch-repeat protein At3g16580 OS=Arabidopsis thaliana OX=3702 GN=At3g16580 PE=2 SV=1 | 0 | |
| TrEMBL | V4M0E5 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10021923mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 22 | AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27690.v2.2, Sp5g16370.v2.2 |
| Brassicaceae | Brassica nigra | 23 | BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... |