Basic Information
Locus ID:
Thhalv10021701m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 144146 | 144775 | - | Thhalv10021701m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 17,002.27 Da | 62.14 | 80.00 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 73 | 148 | 4.60611E-17 | - |
| Pfam | PF00789 | UBX domain | 72 | 122 | 3.1E-8 | IPR001012 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 55 | 149 | 5.17E-18 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 66 | 147 | 4.0E-14 | - |
| ProSiteProfiles | PS50033 | UBX domain profile. | 67 | 148 | 19.749735 | IPR001012 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23605.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_006406007.1 | plant UBX domain-containing protein 12 [Eutrema salsugineum] | 0 |
| Q9LUG7 | Plant UBX domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=PUX12 PE=2 SV=1 | 0 | |
| TrEMBL | V4LAK7 | UBX domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10021701mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | scaffold002973G000030 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G23605.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021701m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g21280.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g025200.2N, BniB07g048370.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005402 |