Basic Information
Locus ID:
Thhalv10021666m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 8800440 | 8801302 | - | Thhalv10021666m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.44 | 18,357.28 Da | 39.71 | 79.58 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13499 | EF-hand domain pair | 22 | 83 | 7.3E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 94 | 157 | 6.8E-16 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 10 | 158 | 3.48E-45 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 6 | 89 | 1.3E-21 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 90 | 163 | 9.8E-25 | - |
| SMART | SM00054 | efh_1 | 132 | 160 | 2.9E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 22 | 50 | 8.5E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 58 | 86 | 0.028 | IPR002048 |
| SMART | SM00054 | efh_1 | 96 | 124 | 1.1E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 92 | 127 | 15.601326 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 18 | 53 | 14.959732 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 128 | 163 | 13.843916 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 54 | 89 | 11.472807 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 105 | 117 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 67 | 79 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 141 | 153 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 31 | 43 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_006408355.1 | probable calcium-binding protein CML18 [Eutrema salsugineum] | 0 |
| Q9M8U1 | Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 PE=1 SV=1 | 0 | |
| TrEMBL | V4MBG3 | Calmodulin OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10021666mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology