Basic Information
Locus ID:
Thhalv10021143m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 5053438 | 5056004 | + | Thhalv10021143m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 36,361.76 Da | 52.21 | 71.21 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 237 | 302 | 3.57258E-18 | - |
| CDD | cd16872 | ARID_HMGB9-like | 41 | 126 | 1.2336E-44 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 239 | 306 | 7.8E-14 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 57 | 126 | 3.4E-13 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 223 | 309 | 1.31E-17 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 44 | 132 | 6.28E-24 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 218 | 319 | 1.2E-18 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 32 | 147 | 6.5E-24 | IPR036431 |
| SMART | SM00398 | hmgende2 | 236 | 307 | 3.6E-14 | IPR009071 |
| SMART | SM01014 | ARID_2 | 36 | 126 | 2.5E-25 | - |
| SMART | SM00501 | bright_3 | 40 | 131 | 5.1E-27 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 39 | 130 | 24.129688 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 237 | 306 | 13.740723 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 220 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_006407232.1 | high mobility group B protein 10 isoform X1 [Eutrema salsugineum] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | V4LE00 | ARID domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10021143mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology