Basic Information
Locus ID:
Thhalv10021010m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 7129587 | 7130660 | - | Thhalv10021010m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 39,348.89 Da | 61.24 | 61.26 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 309 | 346 | 4.32637E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 307 | 348 | 8.2E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 308 | 353 | 4.54E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 354 | 1.9E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 309 | 346 | 5.2E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 309 | 347 | 10.77793 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 302 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006407867.1 | E3 ubiquitin-protein ligase RNF34 [Eutrema salsugineum] | 0 |
| TrEMBL | V4LFP4 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10021010mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology