Basic Information
Locus ID:
Thhalv10021004m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 7508930 | 7510700 | + | Thhalv10021004m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 40,789.69 Da | 66.37 | 70.06 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 302 | 342 | 2.08144E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 301 | 347 | 2.2E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 302 | 348 | 5.89E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 285 | 353 | 5.9E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 303 | 341 | 1.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 303 | 342 | 11.604098 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006407977.2 | LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase LUL4 [Eutrema salsugineum] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | V4LG07 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10021004mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology