Basic Information
Locus ID:
Thhalv10020901m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
recA homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 6283684 | 6285832 | - | Thhalv10020901m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 42,887.60 Da | 32.83 | 99.95 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 67 | 330 | 2.7E-81 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 86 | 325 | 3.7E-40 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 334 | 386 | 4.97E-5 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 94 | 389 | 1.4E-86 | IPR027417 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 95 | 254 | 24.809759 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 261 | 335 | 16.205029 | IPR020587 |
| PRINTS | PR00142 | RecA protein signature | 273 | 301 | 7.9E-57 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 306 | 335 | 7.9E-57 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 187 | 216 | 7.9E-57 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 359 | 376 | 7.9E-57 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 225 | 254 | 7.9E-57 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 153 | 182 | 7.9E-57 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_006407605.1 | DNA repair protein recA homolog 2, mitochondrial isoform X1 [Eutrema salsugineum] | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 | |
| TrEMBL | V4M9J9 | DNA repair protein recA homolog 2, mitochondrial OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020901mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology