Basic Information
Locus ID:
Thhalv10020832m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 2351956 | 2355001 | - | Thhalv10020832m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 46,175.41 Da | 40.41 | 89.61 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 251 | 380 | 7.66992E-65 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 63 | 225 | 6.2E-41 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 264 | 372 | 6.3E-33 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 106 | 394 | 2.8E-72 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 74 | 116 | 4.25E-6 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 28 | 246 | 6.4E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 247 | 411 | 2.8E-60 | IPR027417 |
| SMART | SM00490 | helicmild6 | 291 | 372 | 2.0E-36 | IPR001650 |
| SMART | SM00487 | ultradead3 | 57 | 254 | 1.1E-53 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 69 | 239 | 25.454233 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 250 | 411 | 27.468765 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 38 | 66 | 10.800855 | IPR014014 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_006406464.1 | eukaryotic initiation factor 4A-III homolog [Eutrema salsugineum] | 0 |
| Q94A52 | Eukaryotic initiation factor 4A-III homolog OS=Arabidopsis thaliana OX=3702 GN=EIF4A3 PE=1 SV=2 | 0 | |
| TrEMBL | V4LZG1 | RNA helicase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020832mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology