Basic Information
Locus ID:
Thhalv10020817m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 8937024 | 8939920 | + | Thhalv10020817m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.69 | 44,052.23 Da | 55.16 | 80.29 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 178 | 227 | 1.81968E-30 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 368 | 410 | 3.3724E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 73 | 5.58483E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 184 | 222 | 1.4E-14 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 287 | 342 | 4.1E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.6E-16 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 372 | 407 | 6.7E-11 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 181 | 239 | 2.15E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 283 | 350 | 5.1E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 351 | 414 | 4.38E-15 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 90 | 6.68E-21 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 363 | 411 | 3.4E-24 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 278 | 343 | 8.7E-27 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 7.0E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 177 | 227 | 5.7E-22 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.5E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 184 | 224 | 1.7E-6 | IPR015940 |
| SMART | SM00165 | uba_6 | 372 | 409 | 2.2E-8 | IPR015940 |
| SMART | SM00727 | CBM | 285 | 328 | 1.8E-5 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 415 | 1.1E-115 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 369 | 410 | 14.546953 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 182 | 225 | 12.691477 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.061903 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 313 | 335 | 3.1E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 383 | 397 | 3.1E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 398 | 413 | 3.1E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 366 | 382 | 3.1E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 260 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_006408409.1 | ubiquitin receptor RAD23c [Eutrema salsugineum] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | V4M4H8 | Ubiquitin receptor RAD23 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020817mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology