Basic Information
Locus ID:
Thhalv10020804m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 4715543 | 4719649 | - | Thhalv10020804m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.25 | 46,415.49 Da | 47.90 | 69.41 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 143 | 217 | 1.13989E-51 | - |
| CDD | cd12352 | RRM1_TIA1_like | 59 | 129 | 2.90414E-34 | - |
| CDD | cd12354 | RRM3_TIA1_like | 263 | 338 | 1.01996E-30 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 265 | 324 | 6.4E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 144 | 214 | 2.9E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 59 | 125 | 9.1E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 255 | 347 | 4.34E-19 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 55 | 220 | 2.51E-44 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 140 | 221 | 3.5E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 241 | 342 | 7.2E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 139 | 2.3E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 58 | 127 | 1.1E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 264 | 334 | 2.9E-14 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 143 | 216 | 1.9E-25 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 57 | 131 | 15.220978 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 263 | 338 | 14.69226 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 142 | 220 | 18.359171 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 255 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_006407127.1 | oligouridylate-binding protein 1C [Eutrema salsugineum] | 0 |
| Q9LJH8 | Oligouridylate-binding protein 1C OS=Arabidopsis thaliana OX=3702 GN=UBP1C PE=1 SV=1 | 0 | |
| TrEMBL | V4LDR4 | Oligouridylate-binding protein 1-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020804mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology