Basic Information
Locus ID:
Thhalv10020778m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 7273915 | 7275822 | - | Thhalv10020778m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 48,112.57 Da | 57.35 | 58.56 | -1.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 386 | 417 | 1.5E-6 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 285 | 369 | 1.9E-18 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 285 | 370 | 1.2E-27 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| Coils | Coil | Coil | 274 | 316 | - | - |
| Coils | Coil | Coil | 323 | 343 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06660.1 | PAPA-1-like family protein / zinc finger (HIT type) family protein. | 0 |
| RefSeq | XP_024015386.1 | INO80 complex subunit B [Eutrema salsugineum] | 0 |
| TrEMBL | V4LZR3 | PAPA-1 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020778mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology