Basic Information
Locus ID:
Thhalv10020737m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 7454244 | 7457631 | - | Thhalv10020737m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.97 | 48,547.13 Da | 64.77 | 91.96 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 235 | 282 | 4.65274E-14 | - |
| Pfam | PF12906 | RING-variant domain | 235 | 281 | 2.1E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 231 | 285 | 1.67E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 220 | 289 | 4.4E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 234 | 282 | 8.6E-20 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 227 | 288 | 20.734076 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 235 | 282 | 8.535474 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 34 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006407960.1 | uncharacterized protein LOC18023205 isoform X1 [Eutrema salsugineum] | 0 |
| TrEMBL | V4MAE0 | RING-CH-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020737mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology