Basic Information
Locus ID:
Thhalv10020676m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
WRKY Transcription Factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 9110201 | 9112381 | + | Thhalv10020676m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 50,866.62 Da | 48.31 | 53.33 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 350 | 407 | 1.1E-24 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 206 | 262 | 1.8E-24 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 341 | 409 | 4.18E-29 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 203 | 264 | 2.22E-25 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 191 | 265 | 1.2E-26 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 334 | 410 | 2.0E-35 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 205 | 263 | 3.4E-35 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 349 | 408 | 3.8E-38 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 344 | 409 | 37.73431 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 206 | 264 | 24.030294 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 278 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01080.2 | - | 0 |
| RefSeq | XP_006408459.1 | probable WRKY transcription factor 58 isoform X1 [Eutrema salsugineum] | 0 |
| Q93WU7 | Probable WRKY transcription factor 58 OS=Arabidopsis thaliana OX=3702 GN=WRKY58 PE=2 SV=2 | 0 | |
| TrEMBL | V4M4N4 | WRKY transcription factor 58 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020676mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology