Basic Information
Locus ID:
Thhalv10020625m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 6404754 | 6407728 | + | Thhalv10020625m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 52,990.97 Da | 64.34 | 81.17 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 257 | 305 | 5.74808E-17 | - |
| Pfam | PF12906 | RING-variant domain | 257 | 304 | 7.8E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 253 | 308 | 9.81E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 243 | 312 | 2.4E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 256 | 305 | 1.6E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 249 | 311 | 18.853504 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 480 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09760.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006407641.1 | probable E3 ubiquitin-protein ligase MARCH10 [Eutrema salsugineum] | 0 |
| TrEMBL | V4LZ20 | RING-CH-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020625mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology