Basic Information
Locus ID:
Thhalv10020572m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 4961801 | 4964773 | + | Thhalv10020572m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 53,847.90 Da | 40.24 | 92.34 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 23 | 342 | 6.2E-76 | IPR000490 |
| Pfam | PF07983 | X8 domain | 356 | 426 | 8.3E-19 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 23 | 343 | 2.22E-79 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 22 | 349 | 9.5E-111 | - |
| Gene3D | G3DSA:1.20.58.1040 | - | 350 | 449 | 4.7E-9 | - |
| SMART | SM00768 | X8_cls | 355 | 440 | 6.7E-44 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 257 | 270 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13560.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_006407199.1 | glucan endo-1,3-beta-glucosidase 4 [Eutrema salsugineum] | 0 |
| Q94CD8 | Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1 | 0 | |
| TrEMBL | V4NQ18 | glucan endo-1,3-beta-D-glucosidase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020572mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology