Basic Information
Locus ID:
Thhalv10020555m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 5181272 | 5183329 | - | Thhalv10020555m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 54,890.74 Da | 45.02 | 112.34 | 0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07690 | Major Facilitator Superfamily | 351 | 486 | 2.6E-10 | IPR011701 |
| Pfam | PF00083 | Sugar (and other) transporter | 64 | 244 | 2.1E-33 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 9 | 490 | 1.11E-68 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 23 | 494 | 2.0E-84 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 29 | 486 | 38.260368 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 362 | 377 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_006407270.1 | organic cation/carnitine transporter 7 [Eutrema salsugineum] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | V4M8L9 | MFS domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020555mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology