Basic Information
Locus ID:
Thhalv10020387m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
UBC25
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 4199378 | 4202519 | - | Thhalv10020387m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 64,040.57 Da | 51.49 | 64.85 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 300 | 426 | 3.81645E-33 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 301 | 447 | 1.1E-23 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 281 | 464 | 4.97E-42 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 257 | 533 | 6.9E-86 | IPR016135 |
| SMART | SM00212 | ubc_7 | 300 | 454 | 1.8E-17 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 297 | 457 | 37.966373 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 91 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15355.1 | ubiquitin-conjugating enzyme 25. | 0 |
| RefSeq | XP_006406978.1 | probable ubiquitin-conjugating enzyme E2 25 [Eutrema salsugineum] | 0 |
| Q9LUQ5 | Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana OX=3702 GN=UBC25 PE=2 SV=1 | 0 | |
| TrEMBL | V4NPF9 | UBC core domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020387mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology