Basic Information
Locus ID:
Thhalv10020334m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ATP-dependent DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 7695865 | 7699496 | - | Thhalv10020334m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 67,937.65 Da | 44.82 | 77.94 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 396 | 529 | 2.92433E-69 | - |
| CDD | cd17920 | DEXHc_RecQ | 198 | 395 | 9.85072E-100 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 206 | 374 | 4.9E-16 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 532 | 600 | 2.8E-13 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 411 | 519 | 3.3E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 244 | 540 | 7.45E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 162 | 395 | 1.6E-83 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 396 | 603 | 1.4E-60 | IPR027417 |
| SMART | SM00490 | helicmild6 | 438 | 520 | 2.7E-23 | IPR001650 |
| SMART | SM00487 | ultradead3 | 200 | 404 | 6.8E-25 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 198 | 602 | 4.5E-156 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 212 | 388 | 19.122822 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 410 | 560 | 19.073498 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 140 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_006408035.1 | ATP-dependent DNA helicase Q-like 1 isoform X1 [Eutrema salsugineum] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | V4MAQ8 | ATP-dependent DNA helicase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020334mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology