Basic Information
Locus ID:
Thhalv10020294m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 9290848 | 9294792 | - | Thhalv10020294m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.78 | 68,330.32 Da | 50.27 | 68.57 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 386 | 515 | 1.51594E-62 | - |
| CDD | cd00201 | WW | 20 | 49 | 7.99797E-5 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 191 | 360 | 3.7E-48 | IPR011545 |
| Pfam | PF00397 | WW domain | 19 | 49 | 4.3E-7 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 398 | 506 | 9.4E-33 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 12 | 50 | 3.5E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 239 | 521 | 4.18E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 377 | 548 | 3.4E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 143 | 376 | 4.5E-86 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 14 | 67 | 2.9E-6 | - |
| SMART | SM00490 | helicmild6 | 422 | 506 | 9.3E-33 | IPR001650 |
| SMART | SM00456 | ww_5 | 18 | 51 | 6.0E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 186 | 389 | 7.3E-63 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 198 | 372 | 29.943438 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 401 | 545 | 25.402313 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 167 | 195 | 11.056714 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 17 | 51 | 10.955 | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 318 | 326 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 23 | 49 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 603 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 106 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_006408522.1 | DEAD-box ATP-dependent RNA helicase 14 [Eutrema salsugineum] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | V4LHJ4 | DEAD-box ATP-dependent RNA helicase 14 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020294mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology