Basic Information
Locus ID:
Thhalv10020193m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
strubbelig-receptor family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 5169386 | 5172779 | - | Thhalv10020193m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 74,852.55 Da | 43.38 | 83.73 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 420 | 683 | 1.5E-37 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 142 | 200 | 2.9E-10 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 67 | 1.5E-8 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 389 | 684 | 4.24E-67 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 238 | 1.83E-35 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 494 | 687 | 2.2E-49 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 380 | 493 | 2.3E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 258 | 5.3E-49 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 163 | 186 | 4.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 187 | 209 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 139 | 162 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 93 | 117 | 120.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 416 | 687 | 34.053768 | IPR000719 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 163 | 176 | 4.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 96 | 109 | 4.2E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13065.1 | STRUBBELIG-receptor family 4. | 0 |
| RefSeq | XP_006407265.1 | protein STRUBBELIG-RECEPTOR FAMILY 4 [Eutrema salsugineum] | 0 |
| Q6R2K2 | Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana OX=3702 GN=SRF4 PE=2 SV=1 | 0 | |
| TrEMBL | V4M8L5 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020193mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology