Basic Information
Locus ID:
Thhalv10020162m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 4577938 | 4582402 | + | Thhalv10020162m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 77,513.89 Da | 35.97 | 89.02 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 420 | 689 | 3.2E-40 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 29 | 69 | 7.7E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 117 | 176 | 1.9E-9 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 27 | 230 | 8.08E-36 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 398 | 690 | 3.46E-70 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 497 | 706 | 3.7E-54 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 250 | 3.7E-43 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 382 | 495 | 2.4E-25 | - |
| SMART | SM00369 | LRR_typ_2 | 140 | 162 | 41.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 94 | 122 | 48.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 163 | 186 | 6.9 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 142 | 164 | 7.00349 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 418 | 692 | 36.216267 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 424 | 447 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 259 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14350.1 | STRUBBELIG-receptor family 7. | 0 |
| RefSeq | XP_006407090.1 | protein STRUBBELIG-RECEPTOR FAMILY 7 [Eutrema salsugineum] | 0 |
| Q9LUL4 | Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana OX=3702 GN=SRF7 PE=1 SV=1 | 0 | |
| TrEMBL | V4M869 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020162mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology