Basic Information
Locus ID:
Thhalv10020156m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
BPI/LBP/CETP N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 2140370 | 2144421 | - | Thhalv10020156m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 80,316.49 Da | 41.80 | 101.50 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00026 | BPI2 | 523 | 718 | 2.17799E-58 | - |
| CDD | cd00025 | BPI1 | 276 | 500 | 1.25079E-49 | - |
| Pfam | PF00646 | F-box domain | 17 | 58 | 4.5E-4 | IPR001810 |
| Pfam | PF02886 | LBP / BPI / CETP family, C-terminal domain | 490 | 708 | 2.9E-29 | IPR001124 |
| Pfam | PF01273 | LBP / BPI / CETP family, N-terminal domain | 285 | 454 | 2.1E-29 | IPR017942 |
| SUPERFAMILY | SSF55394 | Bactericidal permeability-increasing protein, BPI | 489 | 718 | 2.35E-47 | IPR017943 |
| SUPERFAMILY | SSF55394 | Bactericidal permeability-increasing protein, BPI | 277 | 486 | 3.92E-38 | IPR017943 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 78 | 1.3E-9 | IPR036047 |
| Gene3D | G3DSA:3.15.10.10 | - | 284 | 462 | 6.4E-116 | - |
| Gene3D | G3DSA:3.15.20.10 | - | 278 | 709 | 6.4E-116 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 12 | 60 | 4.7E-6 | - |
| SMART | SM00329 | bpi2_2 | 518 | 716 | 9.8E-24 | IPR001124 |
| SMART | SM00328 | bpi1_3 | 281 | 504 | 0.0024 | IPR017942 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 15 | 61 | 10.10684 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20270.1 | lipid-binding serum glycoprotein family protein. | 0 |
| RefSeq | XP_024015782.1 | putative BPI/LBP family protein At3g20270 [Eutrema salsugineum] | 0 |
| Q8VYC2 | Putative BPI/LBP family protein At3g20270 OS=Arabidopsis thaliana OX=3702 GN=At3g20270 PE=2 SV=1 | 0 | |
| TrEMBL | V4NN20 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020156mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17944 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5515 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26801, Sbi_jg33767 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8456 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011704 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73567, Sgl77118 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000007168, gene:ENSEOMG00000008317 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0007790 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30132560 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G019530 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713112 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.618.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G20270.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020156m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g18290.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g043620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1074 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g02080 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g24230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.113 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00034023 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24111, Lb5G27651 |
| Poaceae | Echinochloa crus-galli | 2 | BH03.2601, CH03.2809 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0492400.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006347 |
| Poaceae | Oryza coarctata | 2 | Oco17G008410, Oco18G008490 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g32240.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G228400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0705362 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G001220, Chr10G014720, Chr11G007500, Chr14G016500 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G438100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG041420, gene_TRIDC5BG045290 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G275000.1, TraesCS5B02G274800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb102140_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10407 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30571 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.229, evm.TU.LG24.475 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g06150 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.113 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13701 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17754 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.913 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3095 |
| Salicaceae | Populus euphratica | 1 | populus_peu05955 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633599 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014262 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30890_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0643 |