Basic Information
Locus ID:
Thhalv10020151m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 2007547 | 2010471 | - | Thhalv10020151m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 81,116.24 Da | 37.13 | 90.48 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 338 | 642 | 2.49394E-149 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 33 | 319 | 5.85796E-163 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 344 | 638 | 2.4E-21 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 31 | 318 | 7.85E-38 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 337 | 643 | 4.45E-36 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 32 | 319 | 2.2E-32 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 337 | 643 | 2.1E-38 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 33 | 320 | 29.717196 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 337 | 643 | 31.146332 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20520.1 | SHV3-like 3. | 0 |
| RefSeq | XP_006406374.2 | glycerophosphodiester phosphodiesterase GDPDL5 [Eutrema salsugineum] | 0 |
| F4JEQ1 | Glycerophosphodiester phosphodiesterase GDPDL5 OS=Arabidopsis thaliana OX=3702 GN=GDPDL5 PE=2 SV=1 | 0 | |
| TrEMBL | V4LZ74 | glycerophosphodiester phosphodiesterase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020151mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology