Basic Information
Locus ID:
Thhalv10020142m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
kinase) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 7302941 | 7307352 | + | Thhalv10020142m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 82,969.48 Da | 46.04 | 75.43 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 473 | 719 | 2.00187E-131 | - |
| CDD | cd00130 | PAS | 109 | 207 | 2.75475E-11 | IPR000014 |
| Pfam | PF00989 | PAS fold | 101 | 205 | 4.0E-10 | IPR013767 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 467 | 719 | 1.7E-67 | IPR001245 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 100 | 208 | 1.08E-18 | IPR035965 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 455 | 717 | 2.56E-83 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 460 | 544 | 2.7E-30 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 109 | 213 | 3.2E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 545 | 737 | 7.9E-63 | - |
| SMART | SM00091 | pas_2 | 100 | 167 | 1.3E-5 | IPR000014 |
| SMART | SM00220 | serkin_6 | 467 | 727 | 4.5E-56 | IPR000719 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 100 | 207 | 1.8E-11 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 98 | 169 | 15.028591 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 467 | 727 | 41.474117 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 586 | 598 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 646 | 668 | 1.6E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 690 | 712 | 1.6E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 541 | 554 | 1.6E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 627 | 637 | 1.6E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 580 | 598 | 1.6E-11 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 425 | - | - |
| Coils | Coil | Coil | 3 | 33 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06620.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_006407924.1 | dual specificity protein kinase splA isoform X2 [Eutrema salsugineum] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | V4M3B1 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020142mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology