Basic Information
Locus ID:
Thhalv10020131m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
protein binding, zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 6113481 | 6117841 | - | Thhalv10020131m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 86,657.10 Da | 66.94 | 64.06 | -1.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 704 | 744 | 7.38422E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 702 | 749 | 1.8E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 704 | 750 | 1.3E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 691 | 755 | 1.9E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 705 | 744 | 10.276328 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 489 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 564 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 320 | - | - |
| Coils | Coil | Coil | 308 | 328 | - | - |
| Coils | Coil | Coil | 651 | 671 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006407559.2 | E3 ubiquitin-protein ligase LRSAM1 [Eutrema salsugineum] | 0 |
| TrEMBL | V4M2I1 | RING-type domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v100201310mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology