Basic Information
Locus ID:
Thhalv10020121m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
kinase) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 7310601 | 7316025 | + | Thhalv10020121m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.95 | 85,107.12 Da | 48.22 | 75.18 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 112 | 210 | 4.23754E-13 | IPR000014 |
| CDD | cd13999 | STKc_MAP3K-like | 499 | 745 | 6.21088E-130 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 493 | 745 | 2.8E-67 | IPR001245 |
| Pfam | PF00989 | PAS fold | 104 | 210 | 1.2E-12 | IPR013767 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 470 | 744 | 4.59E-84 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 104 | 211 | 4.54E-20 | IPR035965 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 486 | 570 | 1.2E-30 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 571 | 765 | 6.6E-63 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 111 | 216 | 1.5E-23 | - |
| SMART | SM00220 | serkin_6 | 493 | 753 | 4.0E-58 | IPR000719 |
| SMART | SM00091 | pas_2 | 103 | 169 | 2.8E-7 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 103 | 210 | 1.9E-12 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 101 | 149 | 13.225912 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 493 | 753 | 41.756794 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 612 | 624 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 672 | 694 | 9.1E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 606 | 624 | 9.1E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 567 | 580 | 9.1E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 716 | 738 | 9.1E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 653 | 663 | 9.1E-12 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 448 | - | - |
| Coils | Coil | Coil | 6 | 33 | - | - |
| Coils | Coil | Coil | 738 | 758 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06620.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_006407926.1 | probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Eutrema salsugineum] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | V4LZS3 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020121mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology