Basic Information
Locus ID:
Thhalv10020098m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 2160327 | 2163647 | - | Thhalv10020098m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 88,098.14 Da | 47.91 | 72.81 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 17 | 153 | 2.31011E-59 | - |
| Pfam | PF00582 | Universal stress protein family | 18 | 142 | 4.6E-8 | IPR006016 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 474 | 725 | 2.7E-42 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 452 | 725 | 8.09E-70 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 18 | 150 | 2.68E-8 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 17 | 150 | 9.6E-11 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 446 | 543 | 3.0E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 544 | 747 | 4.6E-50 | - |
| SMART | SM00220 | serkin_6 | 471 | 730 | 3.5E-27 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 471 | 747 | 35.4813 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 589 | 601 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 758 | 785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 758 | 797 | - | - |
| Coils | Coil | Coil | 419 | 446 | - | - |
| Coils | Coil | Coil | 351 | 397 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20200.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_006406411.1 | U-box domain-containing protein 35 [Eutrema salsugineum] | 0 |
| Q8S8S7 | U-box domain-containing protein 34 OS=Arabidopsis thaliana OX=3702 GN=PUB34 PE=3 SV=1 | 0 | |
| TrEMBL | V4LVK0 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020098mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology