Basic Information
Locus ID:
Thhalv10020061m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 2230376 | 2235009 | - | Thhalv10020061m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.26 | 93,605.42 Da | 47.45 | 81.97 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 73 | 427 | 1.86065E-86 | - |
| CDD | cd18793 | SF2_C_SNF | 688 | 792 | 9.11427E-54 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 688 | 783 | 9.0E-14 | IPR001650 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 543 | 579 | 9.4E-6 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 94 | 505 | 3.2E-68 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 435 | 840 | 3.1E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 57 | 427 | 1.54E-47 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 539 | 602 | 1.11E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 47 | 134 | 9.1E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 187 | 281 | 7.5E-12 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 282 | 440 | 3.1E-31 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 528 | 594 | 2.9E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 442 | 840 | 2.6E-60 | IPR027417 |
| SMART | SM00487 | ultradead3 | 69 | 404 | 1.3E-28 | IPR014001 |
| SMART | SM00184 | ring_2 | 543 | 581 | 1.8E-4 | IPR001841 |
| SMART | SM00490 | helicmild6 | 700 | 783 | 2.9E-18 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 209 | 389 | 11.131536 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 543 | 582 | 11.07299 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 670 | 836 | 13.456735 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 558 | 567 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 643 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 643 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 186 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20010.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_006406428.2 | helicase-like transcription factor CHR27 [Eutrema salsugineum] | 0 |
| Q9LHE4 | Helicase-like transcription factor CHR27 OS=Arabidopsis thaliana OX=3702 GN=CHR27 PE=1 SV=1 | 0 | |
| TrEMBL | V4NN38 | Helicase-like transcription factor CHR28 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020061mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology