Basic Information
Locus ID:
Thhalv10020057m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 4215344 | 4219517 | + | Thhalv10020057m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 94,393.26 Da | 59.05 | 78.40 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 537 | 840 | 3.34422E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 705 | 739 | 0.0022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 534 | 561 | 0.068 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 617 | 655 | 7.0E-6 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 55 | 303 | 9.11E-21 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 531 | 841 | 4.93E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 508 | 845 | 7.1E-121 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 74 | 306 | 6.7E-25 | - |
| SMART | SM00320 | WD40_4 | 615 | 655 | 7.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 658 | 697 | 0.32 | IPR001680 |
| SMART | SM00320 | WD40_4 | 573 | 612 | 8.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 748 | 787 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 701 | 739 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 801 | 842 | 79.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 2 | 296 | 1.4E-4 | IPR000719 |
| SMART | SM00320 | WD40_4 | 527 | 562 | 0.36 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 708 | 741 | 10.284687 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 296 | 11.934056 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 708 | 741 | 12.346452 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 622 | 659 | 9.968326 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 622 | 664 | 12.613797 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 726 | 740 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 726 | 740 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 642 | 656 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 599 | 613 | 1.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 162 | - | - |
| Coils | Coil | Coil | 171 | 191 | - | - |
| Coils | Coil | Coil | 844 | 845 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_006406987.1 | protein SPA1-RELATED 3 isoform X1 [Eutrema salsugineum] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | V4LDA9 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020057mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology