Basic Information
Locus ID:
Thhalv10019956m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 7388942 | 7393097 | + | Thhalv10019956m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.03 | 117,881.37 Da | 65.98 | 58.88 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 653 | 782 | 9.93966E-60 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 458 | 628 | 1.3E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 665 | 773 | 2.5E-31 | IPR001650 |
| Pfam | PF00397 | WW domain | 22 | 52 | 2.4E-6 | IPR001202 |
| SUPERFAMILY | SSF51045 | WW domain | 17 | 56 | 2.05E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 505 | 790 | 1.59E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 410 | 643 | 4.9E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 644 | 814 | 2.4E-57 | IPR027417 |
| SMART | SM00490 | helicmild6 | 689 | 773 | 4.5E-35 | IPR001650 |
| SMART | SM00487 | ultradead3 | 453 | 656 | 2.3E-65 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 54 | 4.8E-6 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 434 | 462 | 11.416516 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.289901 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 465 | 639 | 30.748224 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 668 | 812 | 24.994003 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 585 | 593 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 946 | 969 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 933 | 1022 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 972 | 996 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 87 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_006407941.1 | DEAD-box ATP-dependent RNA helicase 40 [Eutrema salsugineum] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | V4LZT7 | DEAD-box ATP-dependent RNA helicase 40 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019956mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology