Basic Information
Locus ID:
Thhalv10019944m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 3991304 | 3998974 | + | Thhalv10019944m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 122,420.53 Da | 41.65 | 79.89 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 496 | 535 | 0.061 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 492 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 916 | 949 | 0.0069 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 416 | 948 | 4.03E-48 | IPR036322 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 918 | 1100 | 1.57E-14 | - |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 350 | 448 | 8.63E-7 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 545 | 696 | 1.2E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 319 | 544 | 5.8E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 834 | 1101 | 6.9E-30 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 6.9E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 910 | 949 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 536 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 867 | 907 | 0.19 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 445 | 0.75 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 582 | 44.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 492 | 1.1E-5 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.1E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 585 | 625 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1001 | 1042 | 78.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 3.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 829 | 864 | 130.0 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.745133 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.115286 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 917 | 958 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 458 | 492 | 9.071966 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 501 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 917 | 951 | 9.99469 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_006406906.1 | topless-related protein 4 [Eutrema salsugineum] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | V4LWY0 | Topless-related protein 4-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019944mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology