Basic Information
Locus ID:
Thhalv10019939m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Topless-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 3624801 | 3630897 | - | Thhalv10019939m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 124,758.17 Da | 42.82 | 79.43 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 449 | 483 | 0.0033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 909 | 942 | 0.028 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 347 | 657 | 2.02E-42 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 515 | 1093 | 2.43E-38 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 963 | 1104 | 2.5E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 735 | 962 | 1.5E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 278 | 537 | 3.9E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 538 | 678 | 8.5E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 827 | 858 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 376 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 993 | 1035 | 0.83 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 526 | 0.0036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 904 | 943 | 0.0026 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.9E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 393 | 437 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 483 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 572 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 861 | 901 | 3.4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 9.3E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 575 | 615 | 1.3 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.071995 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 911 | 942 | 9.335602 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 911 | 952 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 593 | 624 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.148359 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 492 | 8.770704 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 470 | 484 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1112 | 1131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1090 | 1131 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_006406802.1 | topless-related protein 2 [Eutrema salsugineum] | 0 |
| Q9LRZ0 | Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2 | 0 | |
| TrEMBL | V4LCS8 | Topless-related protein 2 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019939mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology