Basic Information
Locus ID:
Thhalv10019938m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
LRR receptor-like serine threonine-protein kinase RPK2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 9066776 | 9070438 | - | Thhalv10019938m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 123,807.27 Da | 35.62 | 96.00 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 868 | 1136 | 2.40761E-88 | - |
| Pfam | PF13855 | Leucine rich repeat | 648 | 706 | 6.2E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 173 | 215 | 1.8E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 864 | 1063 | 1.6E-44 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 250 | 272 | 0.013 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 66 | 7.1E-12 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 555 | 753 | 1.77E-32 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 121 | 478 | 4.0E-56 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 842 | 1133 | 1.24E-74 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 225 | 3.1E-47 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 345 | 476 | 6.4E-22 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 938 | 1138 | 2.9E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 824 | 937 | 9.0E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 519 | 754 | 7.4E-49 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 226 | 344 | 4.0E-29 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 296 | 320 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 130 | 154 | 85.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 669 | 693 | 29.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 862 | 1140 | 8.0E-34 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 178 | 201 | 70.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 202 | 226 | 79.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 620 | 643 | 48.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 862 | 1136 | 39.396416 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 868 | 890 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 982 | 994 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02130.1 | receptor-like protein kinase 2. | 0 |
| RefSeq | XP_024015000.1 | LRR receptor-like serine/threonine-protein kinase RPK2 isoform X1 [Eutrema salsugineum] | 0 |
| Q9S7I6 | LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1 | 0 | |
| TrEMBL | V4MBP7 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019938mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology