Basic Information
Locus ID:
Thhalv10019920m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_13 | 5580136 | 5589225 | + | Thhalv10019920m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 142,421.94 Da | 42.98 | 78.40 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 149 | 273 | 3.25425E-39 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 291 | 619 | 5.48508E-170 | - |
| Pfam | PF00917 | MATH domain | 157 | 275 | 5.4E-18 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 293 | 614 | 1.8E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 979 | 1196 | 2.1E-54 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 718 | 969 | 9.7E-78 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 146 | 282 | 2.62E-40 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 288 | 645 | 4.71E-97 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 290 | 618 | 3.9E-89 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 148 | 289 | 2.0E-50 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 778 | 894 | 6.0E-43 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 895 | 992 | 2.1E-27 | - |
| SMART | SM00061 | math_3 | 150 | 254 | 5.0E-19 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 148 | 273 | 38.059464 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 293 | 617 | 40.289238 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 294 | 309 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 533 | 550 | - | IPR018200 |
| Coils | Coil | Coil | 630 | 653 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_024015794.1 | ubiquitin carboxyl-terminal hydrolase 13 isoform X1 [Eutrema salsugineum] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | V4M8X7 | ubiquitinyl hydrolase 1 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019920mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology